PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G038100.2
Common NameB456_013G038100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 239aa    MW: 26287.1 Da    PI: 4.5703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G038100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-06189220134
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskap 34 
                         +++ hn+ Er RR ++  a+  L  llP++s  +
  Gorai.013G038100.2 189 KKQEHNAKERIRRMKLHAAYLALGALLPSDS--T 220
                         6899*************************63..4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.94E-5188223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSSLHLENLF SIPEATDEYL WPLTQDNKDD GKNFSASIQT DGHQCSSSSS QAVMDNVNGN  60
KLDPVLALDQ GIPALLSDYT IEDNARTGDQ LGTTSKFILE SVDHNIVGES MESILDYPID  120
VSLSAPLEDL DDIDLVPHES SSRQLPSTYQ ETGDAHINAK RISSKTRGRN HRFKQGLNME  180
DNGEGTTMKK QEHNAKERIR RMKLHAAYLA LGALLPSDST GSKVCCQLIE EKEYGAYN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465250.11e-163PREDICTED: transcription factor ORG2 isoform X1
TrEMBLA0A0D2V8K21e-178A0A0D2V8K2_G
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]